Group Leader. Bioinformatics and microbiology enthusiast. The research is focused on the microbial ecology of complex environmental communities using DNA sequencing methods including metagenomics, meta-transcriptomics and amplicon sequencing. A strong focus on new technologies related to novel applications, method and software development.
Søren M. Karst
Post Doc. Responsible for wet-lab method development. Illumina MiSeq and HiSeq hacker.
Rasmus H. Kirkegaard
Post Doc. Responsible for Oxford Nanopore sequencing development.
PhD Student. Populating the tree-of-life using full-length SSU rRNA sequencing. Expertise within water related environments.
Martin H. Andersen
Research assistant. Exploring links between anaerobic digesters and microbes. Co-supervised with prof. Per H. Nielsen.
Julie K.T. Pedersen
Msc. Student. Developing new bioinformatic tools for time-series and network analysis.
Kasper S. Andersen
MSc. Student. Developing new bioinformatic tools for ordination analysis. Shiny expert and developing ampvis2.
Msc. Student. Developing methods for on-site DNA sequencing using the Oxford Nanopore MinION platform.
Inspiration from outside our small world.
Mark H. Larsen
Msc. Student. Studying the changes in the microbiome of moose as a result on relocating from Sweden to Denmark. Co-supervised with Trine Hammer Jensen.
Thomas Y. Michaelsen
MSc. Student. Developing a new method for differentiation and resistance dependent classification of diffuse large B-cell lymphomas by the NanoString technology. Co-supervised with prof. Martin Bøgsted.
7th semester student groups
The next generation of brilliant scientists.
Screening for Microbial Dark Matter Using 16S rRNA Amplicon Sequencing
Biotechnology. Lee-Ann Clegg, Ditte Marie Hansen, Patric Skov Schacksen, Jette Fischer Petersen, Johannes Manner-Jensen.
Exploration of unknown life
International Biotechnology. Nicola Procházková, Laura von Soosten, Filip Streško, Piotr Sarna
Screening for novel microbes in Danish soil and sediment using 16S rRNA sequencing
Biology. Ann-Maria Christensen, Fynn-Rasmus Alt, Ingeborg Mose Larsen, Tina Strøm Trolle.