mmgenome: Tools for extracting individual genomes from metagneomes
The mmgenome toolbox enables reproducible extraction of individual genomes from metagenomes. It builds on the multi-metagenome concept, but wraps most of the process of extracting genomes in simple R functions. Thereby making the whole process of binning easy and at the same time reproducible through the Rmarkdown format.
The mmgenome R package also facilitates effortless integration with additional data sources and hence should not be seen as "yet another binning method", but rather a package to integrate different binning strategies.
Check out the dedicated github-page for mmgenome.
ampvis: An R package to visualise amplicon data
The ampvis toolbox aims to provide a set simple but yet highly customizable visualization functions in R. See the dedicated ampvis github-page for more information. A unique feature is that ampvis does not allow stacked-bar plots or pie-charts.